Bourne Identity 2. They start out on what looks like Palolem Beach in Goa, turn and walk off it into some bustling town nothing like the village there, before a few minutes later being embroiled in a car chase through somewhere looking more like Panaji.
Another example from the Bourne movie the takes place in Berlin: when he's on his way to Berlin he's not feeling well and has to pull over. But that scene was filmed in Berlin so I found it rather confusing when shortly after the scene he's still on his way and not there yet at all.
