I think when it comes to organising work / papers / notes, etc., over time you converge to more and more minimal tools, that do some particular thing really well and really fast, rather than continuing to use a more locked-in GUI version that hides limitations behind ease-of-use. Evernote is great - you just might find that you'll outgrow it at some point and look for something with a bit more fine-grained control.
I'm speaking from the point of view of having looked at using all the different flashy to-do lists, all the different 'revolutionary' note taking tools (including Evernote quite extensively), and now using Obsidian, which is basically an IDE for markdown with ability to link files to one another.
The simpler tools force you to come up with systems of organisation / linking if you want to do something more complex, but that's the great thing - you get to build your own system incrementally to a point where it's something that actually works really well for you. It's also Electron, so you can write your own plugins!
I'm speaking from the point of view of having looked at using all the different flashy to-do lists, all the different 'revolutionary' note taking tools (including Evernote quite extensively), and now using Obsidian, which is basically an IDE for markdown with ability to link files to one another.
The simpler tools force you to come up with systems of organisation / linking if you want to do something more complex, but that's the great thing - you get to build your own system incrementally to a point where it's something that actually works really well for you. It's also Electron, so you can write your own plugins!