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> Using a PCA to prove an intrinsic point

A what point?

> You're aware the vectors in a PCA are just linear combinations of the observed features, right?

Yes, I am. Do you have a reason to think that means PCA is bad at representing similarity and kinship because of this?

As for the Slate Star Codex source - that wasn't to prove anything, just to define the "weak man" term. I would have used "straw man", but then you'd dig up some idiot that genuinely believes whatever it is you're debunking as proof that it's not a straw man.




>A what point?

https://www.merriam-webster.com/dictionary/intrinsic

>Do you have a reason to think that means PCA is bad at representing similarity and kinship because of this?

I suggest you read up on the definition of "distance" and "similarity" before drinking the PCA kool-aid. You don't get to define an ad hoc distance just because it fits your ideas about ethnicity. But then, I only have the popgen community to back me up on this. What do you have?

>As for the Slate Star Codex source - that wasn't to prove anything, just to define the "weak man" term.

SSC, providing ammunition to online HBD proponents since 2013.


There's nothing ad hoc about it - PCA is an extremely fundamental statistical tool, and commonly used in genetics, especially to evaluate population structure. A few random examples:

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3392282/

https://speciationgenomics.github.io/pca/

https://journals.plos.org/plosgenetics/article?id=10.1371/jo...

https://www.genetics.org/content/210/2/719

https://www.nature.com/articles/ng0508-491

If that SSC reference bothers you so much, you can look at the Atlantic for a definition of weak man instead: https://www.theatlantic.com/daily-dish/archive/2009/07/the-w...

And I know what intrinsic means, but I don't know what an "intrinsic point" is supposed to be, or what makes my point "intrinsic", as opposed to just a regular point.




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