I'm not quite sure what you're insinuating about Tor. Tor is an opensource project govern by a non-profit. If you're worried about things like backdoors, that's why it was opensourced in the first place.
I'm not sure how you're connecting the CIA with Tor. I wouldn't be surprised if the CIA uses Tor. I know the State Department does.
That's a dramatic statement however and you didn't support it at all with your links. Can you back up the claim that most free VPNs are state-owned? That is what the reply was likely asking for.
My other comment has this ref: https://news.ycombinator.com/item?id=18525041
And Lantern, a P2P VPN popular with the Chinese is backed by CIA (so is Tor):
https://news.ycombinator.com/item?id=20373425