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Pipeline mgmt tool with a GUI, or tool for cli tools with a GUI? ;)

One very widely used option is Galaxy https://galaxyproject.org

You might also want to check out:

- Arvados https://arvados.org

- Chipster https://chipster.csc.fi

- Knime https://www.knime.com

They each have their strenghts and weaknesses.

I'd probably be going with Galaxy as the default option, unless you find specific reasons to go with some of the others.




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