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Those are good points. Journals have to care about this, too, these days -- supplementary information now routinely includes videos (hope you have the right codecs!), word documents, audio, and full or redacted data sets.

I think what appeals to me about literate programming style is that it encourages a return to a more clear and expository style of writing, which has been squeezed out of scientific writing in journals over the years. I don't care what instantiation is required to produce a more uniformly clear and cogent document, I just care that it happens.



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