Vendors benefit from standardization when it comes to the ISA, especially in the commodity/interchangeable market. Qualcomm is currently competing with other vendors to run the same software (Android or Windows). If they make ISA extensions which are not likely to be used by that software, then they're probably wasting their time, or those extensions were not that useful for the general community to begin with.
Useful ISA extensions are likely to remain royalty free at least, if not standardized at the level of the foundation; but if they don't, it's not the end of the world.
The examples of contributions from big players using BSD like licenses, specially in the embedded space, proves otherwise.