I do this stuff professionally, and I've learned the hard way that you either have a reproducible environment or you don't. etckeeper isn't reproducible. Actually rolling back with something like etckeeper is much, much more likely to break something (by deleting a config file used by a newer service, say) than to save you. If it did something like separate branches for each service or component within /etc I might be more sympathetic...but at that point you have half of a CM system already and might as well just go the rest of the way.

If you need reproducibility without a CM framework, keep backups of your machines.